Fred Hutchinson Cancer Center
Enhancing Reproducible Science with GitHub and Docker Specialization

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Fred Hutchinson Cancer Center

Enhancing Reproducible Science with GitHub and Docker Specialization

Make Your Scientific Data Analysis Reproducible. Learn best practices, methods, and tools to enhance the reproducibility of your data analyses

Carrie Wright, PhD
Kate Isaac
Candace Savonen, MS

Instructors: Carrie Wright, PhD

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Get in-depth knowledge of a subject
Beginner level

Recommended experience

1 month
at 10 hours a week
Flexible schedule
Learn at your own pace
Get in-depth knowledge of a subject
Beginner level

Recommended experience

1 month
at 10 hours a week
Flexible schedule
Learn at your own pace

What you'll learn

  • Organize analysis files and track changes in your code over time with version control.

  • Automate the testing and re-running of your code.

  • Enable shareable computing environments so that your results are consistent.

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Taught in English
Recently updated!

July 2025

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  • Learn in-demand skills from university and industry experts
  • Master a subject or tool with hands-on projects
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  • Earn a career certificate from Fred Hutchinson Cancer Center

Specialization - 4 course series

What you'll learn

  • Create reproducible data analyses

  • Apply reproducibility skills to existing analyses scripts and projects

Skills you'll gain

Category: Programming Principles
Category: Open Source Technology
Category: Integrated Development Environments
Category: Code Review
Category: Technical Documentation
Category: GitHub
Category: Git (Version Control System)
Category: Package and Software Management
Category: Scientific Methods
Category: Bioinformatics
Category: Rmarkdown
Category: Jupyter
Category: Data Analysis
Category: R Programming

What you'll learn

  • Enhance reproducibility and replicability of data analyses

  • Introduction to reproducibility tools

Skills you'll gain

Category: Containerization
Category: Code Review
Category: GitHub
Category: Docker (Software)
Category: Git (Version Control System)
Category: Technical Communication
Category: Automation
Category: Version Control
Category: Software Development Tools
Category: Bioinformatics
Category: Medical Science and Research
Category: Health Informatics
Category: R Programming
Category: Science and Research
Category: Data Analysis

What you'll learn

  • Goal of this course: Equip learners with basics skills and confidence to utilize containers within the context of scientific software analyses.

Skills you'll gain

Category: Docker (Software)
Category: Containerization
Category: CI/CD
Category: GitHub
Category: Software Installation
Category: Software Development
Category: Command-Line Interface
Category: Continuous Integration
Category: Continuous Deployment
Category: Devops Tools
Category: Software Versioning
Category: Development Environment
Category: Debugging
Category: Application Deployment

What you'll learn

  • Utilize automation to enhance scientific projects and save time

    Troubleshoot most common GitHub Actions errors

Skills you'll gain

Category: Automation
Category: GitHub
Category: Continuous Integration
Category: CI/CD
Category: Test Automation
Category: Continuous Deployment
Category: Debugging
Category: Scientific Methods
Category: Docker (Software)
Category: Science and Research
Category: YAML
Category: Bioinformatics
Category: Development Environment
Category: Software Development

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Instructors

Carrie Wright, PhD
Fred Hutchinson Cancer Center
13 Courses16,758 learners

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